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TOGGLE: toolbox for generic NGS analyses

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Monat C., Tranchant-Dubreuil C., Kougbeadjo A., Farcy C., Ortega-Abboud E., Amanzougarene S., Ravel S., Agbessi M., Orjuela-Bouniol J., Summo M., Sabot F.
2015

Background: The explosion of NGS (Next Generation Sequencing) sequence data requires a huge effort in Bioinformatics methods and analyses. The creation of dedicated, robust and reliable pipelines able to handle dozens of samples from raw FASTQ data to relevant biological data is a time-consuming task in all projects relying on NGS. To address this, we created a generic and modular toolbox for ...

Méthodes mathématiques et statistiques; Méthodes de relevé; Génétique et amélioration des plantes; Génétique et amélioration des animaux

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