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Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps

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Belser C., Istace B., Denis E., Dubarry M., Baurens F.C., Falentin C., Genete M., Berrabah W., Chèvre A.M., Delourme R., Deniot G., Denoeud F., Duffé P., Engelen S., Lemainque A., Manzanares-Dauleux M.J., Martin G., Morice J., Noël B., Vekemans X., D'Hont A., Rousseau-Gueutin M., Barbe V., Cruaud C., Wincker P., Aury J.M.
2018

Plant genomes are often characterized by a high level of repetitiveness and polyploid nature. Consequently, creating genome assemblies for plant genomes is challenging. The introduction of short-read technologies 10 years ago substantially increased the number of available plant genomes. Generally, these assemblies are incomplete and fragmented, and only a few are at the chromosome scale. ...

Génétique et amélioration des plantes; Méthodes de recherche

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