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A large set of 26 new reference transcriptomes dedicated to comparative population genomics in crops and wild relatives

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Sarah G., Homa F., Pointet S., Contreras S., Sabot F., Nabholz B., Santoni S., Sauné L., Ardisson M., Chantret N., Sauvage C., Tregear J., Jourda C., Pot D., Vigouroux Y., Chaïr H., Scarcelli N., Billot C., Yahiaoui N., Bacilieri R., Khadari B., Boccara M., Barnaud A., Péros J.P., Labouisse J.P., Pham J.L., David J., Glemin S., Ruiz M.
2016

We produced a unique large data set of reference transcriptomes to obtain new knowledge about the evolution of plant genomes and crop domestication. For this purpose, we validated a RNA-Seq data assembly protocol to perform comparative population genomics. For the validation, we assessed and compared the quality of de novo Illumina short-read assemblies using data from two crops for which an ...

Taxonomie végétale et phyto-géographie; Génétique et amélioration des plantes

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